Purified EDEM3 or EDEM1 alone produces determinant oligosaccharide structures from M8B in mammalian glycoprotein ERAD

Author:

George Ginto1ORCID,Ninagawa Satoshi1ORCID,Yagi Hirokazu2ORCID,Furukawa Jun-ichi3ORCID,Hashii Noritaka4ORCID,Ishii-Watabe Akiko4,Deng Ying1ORCID,Matsushita Kazutoshi1ORCID,Ishikawa Tokiro1ORCID,Mamahit Yugoviandi P5ORCID,Maki Yuta56ORCID,Kajihara Yasuhiro56ORCID,Kato Koichi27ORCID,Okada Tetsuya1ORCID,Mori Kazutoshi1ORCID

Affiliation:

1. Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan

2. Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan

3. Department of Advanced Clinical Glycobiology, Graduate School of Medicine, Hokkaido University, Sapporo, Japan

4. Division of Biological Chemistry and Biologicals, National Institute of Health Sciences, Kawasaki, Japan

5. Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Japan

6. Project Research Center for Fundamental Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan

7. Exploratory Research Center on Life and Living Systems (ExCELLS) and Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki, Japan

Abstract

Sequential mannose trimming of N-glycan, from M9 to M8B and then to oligosaccharides exposing the α1,6-linked mannosyl residue (M7A, M6, and M5), facilitates endoplasmic reticulum-associated degradation of misfolded glycoproteins (gpERAD). We previously showed that EDEM2 stably disulfide-bonded to the thioredoxin domain-containing protein TXNDC11 is responsible for the first step (George et al., 2020). Here, we show that EDEM3 and EDEM1 are responsible for the second step. Incubation of pyridylamine-labeled M8B with purified EDEM3 alone produced M7 (M7A and M7C), M6, and M5. EDEM1 showed a similar tendency, although much lower amounts of M6 and M5 were produced. Thus, EDEM3 is a major α1,2-mannosidase for the second step from M8B. Both EDEM3 and EDEM1 trimmed M8B from a glycoprotein efficiently. Our confirmation of the Golgi localization of MAN1B indicates that no other α1,2-mannosidase is required for gpERAD. Accordingly, we have established the entire route of oligosaccharide processing and the enzymes responsible.

Funder

Ministry of Education, Culture, Sports, Science and Technology

Takeda Science Foundation

Kobayashi Foundation

Joint Research by Exploratory Research Center on Life and Living Systems

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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