Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination
Author:
Truelove Shaun1ORCID, Smith Claire P1, Qin Michelle2, Mullany Luke C13, Borchering Rebecca K4ORCID, Lessler Justin5, Shea Katriona4, Howerton Emily4, Contamin Lucie6, Levander John6, Kerr Jessica6, Hochheiser Harry6ORCID, Kinsey Matt3, Tallaksen Kate3, Wilson Shelby3, Shin Lauren3, Rainwater-Lovett Kaitlin3ORCID, Lemairtre Joseph C7, Dent Juan1ORCID, Kaminsky Joshua1, Lee Elizabeth C1, Perez-Saez Javier1, Hill Alison1, Karlen Dean8, Chinazzi Matteo9, Davis Jessica T9, Mu Kunpeng9, Xiong Xinyue9, Pastore y Piontti Ana9, Vespignani Alessandro9, Srivastava Ajitesh10, Porebski Przemyslaw11ORCID, Venkatramanan Srinivasan11, Adiga Aniruddha11, Lewis Bryan11ORCID, Klahn Brian11, Outten Joseph11, Orr Mark11, Harrison Galen11, Hurt Benjamin11, Chen Jiangzhuo11, Vullikanti Anil11, Marathe Madhav11, Hoops Stefan11, Bhattacharya Parantapa11, Machi Dustin11, Chen Shi12, Paul Rajib12, Janies Daniel12, Thill Jean-Claude12ORCID, Galanti Marta13ORCID, Yamana Teresa K13ORCID, Pei Sen13ORCID, Shaman Jeffrey L13ORCID, Healy Jessica M14, Slayton Rachel B14, Biggerstaff Matthew14, Johansson Michael A14, Runge Michael C15ORCID, Viboud Cecile16ORCID
Affiliation:
1. Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University 2. Harvard University 3. Johns Hopkins University Applied Physics Laboratory 4. Pennsylvania State University 5. University of North Carolina at Chapel Hill 6. University of Pittsburgh 7. École polytechnique fédérale de Lausanne 8. University of Victoria 9. Northeastern University 10. University of Southern California 11. University of Virginia 12. University of North Carolina at Charlotte 13. Columbia University 14. CDC COVID-19 Response Team 15. United States Geological Survey 16. Fogarty International Center, National Institutes of Health
Abstract
In Spring 2021, the highly transmissible SARS-CoV-2 Delta variant began to cause increases in cases, hospitalizations, and deaths in parts of the United States. At the time, with slowed vaccination uptake, this novel variant was expected to increase the risk of pandemic resurgence in the US in summer and fall 2021. As part of the COVID-19 Scenario Modeling Hub, an ensemble of nine mechanistic models produced 6-month scenario projections for July–December 2021 for the United States. These projections estimated substantial resurgences of COVID-19 across the US resulting from the more transmissible Delta variant, projected to occur across most of the US, coinciding with school and business reopening. The scenarios revealed that reaching higher vaccine coverage in July–December 2021 reduced the size and duration of the projected resurgence substantially, with the expected impacts was largely concentrated in a subset of states with lower vaccination coverage. Despite accurate projection of COVID-19 surges occurring and timing, the magnitude was substantially underestimated 2021 by the models compared with the of the reported cases, hospitalizations, and deaths occurring during July–December, highlighting the continued challenges to predict the evolving COVID-19 pandemic. Vaccination uptake remains critical to limiting transmission and disease, particularly in states with lower vaccination coverage. Higher vaccination goals at the onset of the surge of the new variant were estimated to avert over 1.5 million cases and 21,000 deaths, although may have had even greater impacts, considering the underestimated resurgence magnitude from the model.
Funder
National Science Foundation Huck Institutes of the Life Sciences National Institute of General Medical Sciences United States Department of Health and Human Services California Department of Public Health Johns Hopkins University National Institutes of Health Swiss National Science Foundation Virginia Department of Health Centers for Disease Control and Prevention Defense Threat Reduction Agency University of Virginia COVID-19 HPC Consortium Amazon Web Services Models of Infectious Disease Agent Study North Carolina Biotechnology Center Council of State and Territorial Epidemiologists Morris-Singer Foundation
Publisher
eLife Sciences Publications, Ltd
Subject
General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience
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