Emphysema Quantification and Severity Classification with 3-Dimensional Averaging Kernel and Airways Removal

Abstract

AbstractBackgroundEmphysema is a common pulmonary pathology known to be associated with increased risk of lung cancer and lung biopsy complications. Prevailing quantitation method of calculating voxel-wise percentage of low attenuation area (LAA) of lung tissue from CT scans is prone to noise and error due overcounting of single voxel LAA and incomplete segmentation of airways.PurposeWe aim to develop an accurate algorithm to quantitatively measure emphysema and classify its severity..Methods and MaterialsTwo chest CT datasets were obtained from two tertiary hospitals as training and external validation datasets. Exclusion criteria included any patients whose emphysema extent was not specified by the accompanying report. The training dataset included 722 patients, and the validation dataset included 1006 patients. Following lung segmentation and airways removal, we applied convolution of the segmented lung with averaging kernels of different sizes in 2D and 3D. Cutoffs between “none,” “mild to moderate,” and “severe” emphysema were determined via weighted logistic regression on the training dataset, and the categorical emphysema extent was obtained for each patient. The main measure for evaluating model performance was area under the curve (AUC) of the receiver operating characteristic (ROC) on the training dataset and accuracy of classification on both the training and the validation dataset. The 1×1×1 kernel, which is equivalent to the traditional LAA score, was used for comparison to other kernels for performance evaluation.ResultsThe best model used a 3D 3×3×3 kernel for average filtering with airways post processing and achieved a mean AUC of 0.782 and 0.985 for “none”-versus-rest and “severe”-versus-rest classifications respectively. It achieved a 0.676 and 0.757 multiclass classification accuracy on the training and validation dataset respectively.Conclusions and RelevanceWe present an automated pipeline that can achieve accurate emphysema quantification and severity classification. We showed that convolving the segmented lung with a 3D 3×3×3 kernel and post-processing to remove airways can reliably quantify emphysema.