Data Release: High-Resolution Imaging and Segmentation of P7 Mouse Tissue Microarchitecture Using FIB-SEM and Machine Learning

Author:

Ackerman DavidORCID,Avetissian EmmaORCID,Bleck Christopher K. E.ORCID,Bogovic John A.ORCID,Innerberger MichaelORCID,Korff WyattORCID,Li Wei-Ping,Lu ZhiyuanORCID,Petruncio AlysonORCID,Preibisch StephanORCID,Qiu WeiORCID,Rhoades JeffORCID,Saalfeld StephanORCID,Silva MalanORCID,Trautman Eric T.ORCID,Vorimo RebeccaORCID,Weigel AubreyORCID,Yu Zhiheng,Zubov YuriiORCID,

Abstract

This report presents a comprehensive data release exploring the tissue microarchitecture of P7 aged mice using Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) combined with machine learning-based segmentations of nuclei. The study includes high-resolution 3D volumes and nucleus segmentations for seven vital tissues—pancreas, liver, kidney, heart, thymus, hippocampus, and skin—from a single mouse. The detailed datasets are openly accessible onOpenOrganelle.org, providing a valuable resource for the scientific community to support further research and collaboration.

Publisher

Cold Spring Harbor Laboratory

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