A chromosome-level genome assembly ofDracaena cambodianaand comparative genomics analysis highlights the distinct biological features of two resource species of dragon’s blood
Author:
Xu Yanhong,Peng Junxiang,Li Sipeng,Liu Yang,Wen Dong,Jiang Jiemei,Rong Mei,Wei Wei,Wang Qiuling,Jin Yue,Yang Shuwen,Wang Siyu,Wei Jian-he
Abstract
AbstractThis study reports a chromosome-level genome forDracaena cambodiana, one of two typical dracaena species in China. This work will help to deepen the understanding of the dracaena species and the conservation and development of plant resources. The final assembly consisted of 54 scaffolds, spanning 1.08 Gb, with a scaffold N50 size of 52.29 Mb, encoded 36860 predicted protein-coding genes. A total of 1,064,810,157 bp of genome sequences were located on 20 chromosomes (2n = 40), accounting for 98.46%. We investigate the possible mechanisms of the longevity of dracaena, the longest-lived plant in the world, which involve DNA repair and post-translational modification. We also performed comparative genomic analysis of the previously assembled genome ofDracaena cochinchinesiswith this genome, and found that the two involved interaction of plant−pathogen interaction and ubiquitin mediated proteolysis, which may reveal why Dracaena has environmental adaptability and longevity characteristics.
Publisher
Cold Spring Harbor Laboratory
Reference54 articles.
1. Alexandros, S. (n.d.). “RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies,” Bioinformatics, 1312–1313.
2. UniProt: the Universal Protein knowledgebase
3. Gene Ontology: tool for the unification of biology
4. The InterPro protein families and domains database: 20 years on
5. Bos, J. Dracaena . (1998) In the Families and Genera of Vascular Plants; Kubitzki, K., Ed.; Springer: Berlin/Heidelberg, Germany, Volume III, pp. 238–241.