A Multi-scale, Multiomic Atlas of Human Normal and Follicular Lymphoma Lymph Nodes

Author:

Radtke Andrea J.ORCID,Postovalova EkaterinaORCID,Varlamova ArinaORCID,Bagaev AlexanderORCID,Sorokina MariaORCID,Kudryashova OlgaORCID,Meerson MarkORCID,Polyakova MargaritaORCID,Galkin IliaORCID,Svekolkin ViktorORCID,Isaev SergeyORCID,Perelman Grigory,Lozinsky YaroslavORCID,Yaniv ZivORCID,Lowekamp Bradley C.ORCID,Speranza EmilyORCID,Yao LiORCID,Pittaluga StefaniaORCID,Shaffer Arthur L.,Jonigk DannyORCID,Phelan James D.ORCID,Davies-Hill Theresa,Huang Da Wei,Ovcharov PavelORCID,Nomie Krystle,Nuzhdina EkaterinaORCID,Kotlov NikitaORCID,Ataullakhanov RavshanORCID,Fowler NathanORCID,Kelly MichaelORCID,Muppidi JaganORCID,Davis JeremyORCID,Hernandez Jonathan M.,Wilson Wyndham H.,Jaffe Elaine S.ORCID,Staudt Louis M.ORCID,Roschewski MarkORCID,Germain Ronald N.ORCID

Abstract

SUMMARYReference atlases, molecular and spatial maps of mammalian tissues, are critical resources for discovery efforts and translational research. Their utility is dependent on operationalizing the resulting data by identifying cell types, histological patterns, and predictive biomarkers underlying health and disease. The human lymph node (LN) offers a compelling use case because of its importance in immunity, structural and cellular diversity, and neoplastic involvement. One hematological malignancy, follicular lymphoma (FL), evolves from developmentally blocked germinal center B cells residing in and trafficking through these tissues. To promote survival and immune escape, tumor B cells undergo significant genetic changes and extensively remodel the lymphoid microenvironment. Here, we present an integrated portrait of healthy and FL LNs using multiple genomic and advanced imaging technologies. By leveraging the strengths of each platform, we identified several tumor-specific features and microenvironmental patterns enriched in individuals who experience early relapse, the most high-risk of FL patients.

Publisher

Cold Spring Harbor Laboratory

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