Protein side-chain packing problem: is there still room for improvement?-Reference-Cited by-同舟云学术

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Protein side-chain packing problem: is there still room for improvement?

Published:2016-08-26 Issue: Volume: Page:bbw079
ISSN:1467-5463
Container-title:Briefings in Bioinformatics
language:en
Short-container-title:Brief Bioinform

Author:

Colbes José,Corona Rosario I.,Lezcano Christian,Rodríguez David,Brizuela Carlos A.

Publisher

Oxford University Press (OUP)

Subject

Molecular Biology,Information Systems

Link

http://academic.oup.com/bib/article-pdf/doi/10.1093/bib/bbw079/9522785/bbw079.pdf

Reference40 articles.

1. Knowledge-based prediction of protein structures and the design of novel molecules

2. De Novo Protein Design: Fully Automated Sequence Selection

3. Using known substructures in protein model building and crystallography;Jones;EMBO J,1986

4. Grow to Fit Molecular Dynamics (G2FMD): an ab initio method for protein side-chain assignment and refinement

5. Rotamer Libraries in the 21st Century

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1. Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications;International Journal of Molecular Sciences;2023-08-30

2. Solvent Accessibility Promotes Rotamer Errors during Protein Modeling with Major Side-Chain Prediction Programs;Journal of Chemical Information and Modeling;2023-07-06

3. Artificial intelligence for template-free protein structure prediction: a comprehensive review;Artificial Intelligence Review;2022-12-17

4. OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors;Briefings in Bioinformatics;2021-12-15

5. OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods;Journal of Chemical Information and Modeling;2020-11-19

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