Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity-Reference-Cited by-同舟云学术

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

Published:2017-12-13 Issue:2 Volume:7 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:

Author:

Edger Patrick P¹²,VanBuren Robert¹,Colle Marivi¹,Poorten Thomas J³,Wai Ching Man¹,Niederhuth Chad E⁴,Alger Elizabeth I¹,Ou Shujun¹²,Acharya Charlotte B³,Wang Jie⁵,Callow Pete¹,McKain Michael R⁶^ORCID,Shi Jinghua⁷,Collier Chad⁷,Xiong Zhiyong⁸,Mower Jeffrey P⁹,Slovin Janet P¹⁰,Hytönen Timo¹¹,Jiang Ning¹²,Childs Kevin L⁵¹²,Knapp Steven J³

Affiliation:

1. Department of Horticulture, Ecology, Evolutionary Biology, and Behavior, Department of Plant Biology, and Center for Genomics Enabled Plant Science, Michigan State University, East Lansing, Michigan, 48823

2. Ecology, Evolutionary Biology, and Behavior, Department of Plant Biology, and Center for Genomics Enabled Plant Science, Michigan State University, East Lansing, Michigan, 48823

3. Department of Plant Sciences, University of California - Davis, Davis, California, 95616

4. Department of Genetics, University of Georgia, Athens, Georgia, 30602

5. Department of Plant Biology, and Center for Genomics Enabled Plant Science, Michigan State University, East Lansing, Michigan, 48823

6. Donald Danforth Plant Science Center, St. Louis, Missouri, 63132

7. Bionano Genomics, San Diego, California, 92121

8. Potato Engineering and Technology Research Center, Inner Mongolia University, Hohhot, 010021, China

9. Center for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska, 68588

10. USDA/ARS, Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville, Maryland, 20705

11. Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, 00014, Finland

12. Center for Genomics Enabled Plant Science, Michigan State University, East Lansing, Michigan, 48823

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://academic.oup.com/gigascience/article-pdf/7/2/gix124/24620926/gix124.pdf

Reference50 articles.

1. Current challenges in de novo plant genome sequencing and assembly;Schatz;Genome Biol,2012

2. Progress, challenges and the future of crop genomes;Michael;Curr Opin Plant Biol,2015

3. The genome of woodland strawberry (Fragaria vesca);Shulaev;Nat Genet,2011

4. Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae);Tennessen;G3,2013

5. Strawberry genes and genomics;Folta;Crit Rev Plant Sci,2006

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