A comprehensive review and comparison of different computational methods for protein remote homology detection-Reference-Cited by-同舟云学术

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A comprehensive review and comparison of different computational methods for protein remote homology detection

Published:2016-11-13 Issue:2 Volume:19 Page:231-244
ISSN:1467-5463
Container-title:Briefings in Bioinformatics
language:en
Short-container-title:

Author:

Chen Junjie¹,Guo Mingyue¹,Wang Xiaolong¹²,Liu Bin¹²

Affiliation:

1. School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong, China

2. Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong, China

Funder

National Natural Science Foundation of China

Natural Science Foundation of Guangdong Province

Publisher

Oxford University Press (OUP)

Subject

Molecular Biology,Information Systems

Link

http://academic.oup.com/bib/article-pdf/19/2/231/25524173/bbw108.pdf

Reference119 articles.

1. An integrated view of protein evolution;Pál;Nat Rev Genet,2006

2. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection;Liu;Bioinformatics,2014

3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Res,1997

4. Iterated profile searches with PSI-BLAST—a tool for discovery in protein databases;Altschul;Trends Biochem Sci,1998

5. Twilight zone of protein sequence alignments;Rost;Protein Eng,1999

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