Insights into the Evolution of the New World Diploid Cottons (Gossypium, SubgenusHouzingenia) Based on Genome Sequencing

Author:

Grover Corrinne E1ORCID,Arick Mark A2,Thrash Adam2,Conover Justin L1,Sanders William S234,Peterson Daniel G2,Frelichowski James E5,Scheffler Jodi A6,Scheffler Brian E7,Wendel Jonathan F1

Affiliation:

1. Department of Ecology, Evolution, and Organismal Biology, Iowa State University

2. Institute for Genomics, Biocomputing, and Biotechnology, Mississippi State University

3. Department of Computer Science & Engineering, Mississippi State University

4. The Jackson Laboratory, Connecticut

5. USDA, Crop Germplasm Research Unit, College Station, Texas

6. USDA, Crop Genetics Research Unit, Stoneville, Mississippi

7. USDA, Genomics and Bioinformatics Research Unit, Stoneville, Mississippi

Funder

NSF Plant Genome Program

USDA ARS

Publisher

Oxford University Press (OUP)

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Reference112 articles.

1. Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP;Abdalla;Theor Appl Genet,2001

2. geomorph: an r package for the collection and analysis of geometric morphometric shape data Paradis E, editor;Adams;Methods Ecol Evol,2013

3. Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes;Álvarez;Plant Syst Evol,2005

4. Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives;Alvarez;Evolution (N Y),2006

5. Trimmomatic: a flexible trimmer for Illumina sequence data;Bolger;Bioinformatics,2014

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