Chromatin accessibility prediction via a hybrid deep convolutional neural network-Reference-Cited by-同舟云学术

Chromatin accessibility prediction via a hybrid deep convolutional neural network

Published:2017-10-23 Issue:5 Volume:34 Page:732-738
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Liu Qiao¹,Xia Fei²,Yin Qijin¹,Jiang Rui¹

Affiliation:

1. MOE Key Laboratory of Bioinformatics; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST; Department of Automation, Tsinghua University, Beijing, China

2. Department of Electrical Engineering, Stanford University, Stanford, CA, USA

Funder

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/5/732/25170723/btx679.pdf

Reference36 articles.

1. Annotating non-coding regions of the genome;Alexander;Nat. Rev. Genet,2010

2. Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning;Alipanahi;Nat. Biotechnol,2015

3. The transcription factor Egr1 is a direct regulator of multiple tumor suppressors including TGFβ1, PTEN, p53 and fibronectin: Egr1 is a potential target of;Baron;Gene Ther. Prostate Cancer Cancer Gene Ther,2006

4. Natural language processing (almost) from scratch;Collobert;J Mach, Learn. Res,2011

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