Optimal seed solver: optimizing seed selection in read mapping-Reference-Cited by-同舟云学术

Optimal seed solver: optimizing seed selection in read mapping

Published:2015-11-14 Issue:11 Volume:32 Page:1632-1642
ISSN:1460-2059
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Xin Hongyi¹,Nahar Sunny¹,Zhu Richard¹,Emmons John²,Pekhimenko Gennady¹,Kingsford Carl³,Alkan Can⁴,Mutlu Onur¹⁵

Affiliation:

1. Computer Science Department,

2. Department of Computer Science and Engineering, Washington University, St. Louis, MO 63130, USA

3. Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA,

4. Department of Computer Engineering, Bilkent University, Bilkent, Ankara 06800, Turkey and

5. Department of Electrical and Computer Engineering,

Funder

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/32/11/1632/26178842/btv670.pdf

Reference35 articles.

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2. An integrated map of genetic variation from 1 092 human genomes;1000 Genomes Project Consortium;Nature,2012

3. Hobbes: optimized gram-based methods for efficient read alignment;Ahmadi;Nucleic Acids Res.,2011

4. Personalized copy number and segmental duplication maps using next-generation sequencing;Alkan;Nat. Genet.,2009

5. A block-sorting lossless data compression algorithm Technical Report, 124, Digital Equipment Corporation;Burrows,1994

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