Hobbes: optimized gram-based methods for efficient read alignment
Author:
Affiliation:
1. Department of Computer Science and 2 Institute of Genomics and Bioinformatics, University of California, Irvine, CA 92697, USA
Publisher
Oxford University Press (OUP)
Subject
Genetics
Link
http://academic.oup.com/nar/article-pdf/40/6/e41/25334293/gkr1246.pdf
Reference28 articles.
1. A block sorting lossless data compression algorithm;Burrows,1994
2. An experimental study of an opportunistic index;Ferragina,2001
3. Ultrafast and memory-efficient alignment of short dna sequences to the human genome;Langmead;Genome Biol.,2009
4. Fast and accurate short read alignment with burrows-wheeler transform;Li;Bioinformatics,2009
5. Soap2: an improved ultrafast tool for short read alignment;Li;Bioinformatics,2009
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