SpaRC: scalable sequence clustering using Apache Spark-Reference-Cited by-同舟云学术

SpaRC: scalable sequence clustering using Apache Spark

Published:2018-08-23 Issue:5 Volume:35 Page:760-768
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Shi Lizhen¹,Meng Xiandong²³,Tseng Elizabeth⁴,Mascagni Michael¹,Wang Zhong²³⁵^ORCID

Affiliation:

1. Department of Computer Science, School of Computer Science, Florida State University, Tallahassee, FL, USA

2. US Department of Energy, Joint Genome Institute, Walnut Creek, CA, USA

3. Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA

4. Pacific Biosciences Inc, Menlo Park, CA, USA

5. School of Natural Sciences, University of California at Merced, Merced, CA, USA

Funder

Biological and Environmental Research

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/5/760/27994930/bty733.pdf

Reference39 articles.

1. Accurate and comprehensive sequencing of personal genomes;Ajay;Genome Res,2011

2. A framework for space-efficient read clustering in metagenomic samples;Alanko;BMC Bioinformatics,2017

Cited by 13 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Spark-Based Label Diffusion and Label Selection Community Detection Algorithm for Metagenome Sequence Clustering;International Journal of Computational Intelligence Systems;2023-11-07

2. BigFiRSt: A Software Program Using Big Data Technique for Mining Simple Sequence Repeats From Large-Scale Sequencing Data;Frontiers in Big Data;2022-01-18

3. A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce;IEEE/CAA Journal of Automatica Sinica;2022-01

4. LSHvec;Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics;2021-08

5. Parallel computing for genome sequence processing;Briefings in Bioinformatics;2021-04-05