Lineage-associated underrepresented permutations (LAUPs) of mammalian genomic sequences based on a Jellyfish-based LAUPs analysis application (JBLA)-Reference-Cited by-同舟云学术

Lineage-associated underrepresented permutations (LAUPs) of mammalian genomic sequences based on a Jellyfish-based LAUPs analysis application (JBLA)

Published:2018-05-14 Issue:21 Volume:34 Page:3624-3630
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Zhang Le¹²^ORCID,Xiao Ming²³,Zhou Jingsong¹,Yu Jun⁴⁵

Affiliation:

1. College of Computer Science, Sichuan University, Chengdu, China

2. School of Computer and Information Science, Southwest University, Chongqing, China

3. College of Mobile Telecommunications, Chongqing University of Posts and Telecommunications, Chongqing, China

4. CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China

5. University of Chinese Academy of Sciences, Beijing, China

Funder

National Natural Science Foundation of China

National Science and Technology Major Project

Chongqing Research Program of Basic Research and Frontier Technology

Chinese Chongqing Distinguish Youth Funding

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/21/3624/26146969/bty392.pdf

Reference47 articles.

1. Nullomers: really a matter of natural selection?;Acquisti;PLos One,2007

2. MEME SUITE: tools for motif discovery and searching;Bailey;Nucleic Acids Res,2009

3. Fitting a mixture model by expectation maximization to discover motifs in biopolymers;Bailey;Proc. Int. Conf. Intell. Syst. Mol. Biol,1994

4. Sequence permutations in the molecular evolution of DNA methyltransferases;Bujnicki;BMC Evol. Biol,2002

5. Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes;Byun;Infect. Immun,1999

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