Affiliation:
1. Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg 69118, Germany
2. Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe 76131, Germany
Abstract
Abstract
Summary
We present genesis, a library for working with phylogenetic data, and gappa, an accompanying command-line tool for conducting typical analyses on such data. The tools target phylogenetic trees and phylogenetic placements, sequences, taxonomies and other relevant data types, offer high-level simplicity as well as low-level customizability, and are computationally efficient, well-tested and field-proven.
Availability and implementation
Both genesis and gappa are written in modern C++11, and are freely available under GPLv3 at http://github.com/lczech/genesis and http://github.com/lczech/gappa.
Supplementary information
Supplementary data are available at Bioinformatics online.
Funder
Klaus Tschira Stiftung gGmbH
Publisher
Oxford University Press (OUP)
Subject
Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability
Cited by
162 articles.
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