Fast and accurate phylogeny reconstruction using filtered spaced-word matches

Author:

Leimeister Chris-André,Sohrabi-Jahromi Salma,Morgenstern Burkhard

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference58 articles.

1. Hobbes: optimized gram-based methods for efficient read alignment;Ahmadi;Nucleic Acids Res,2011

2. Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer;Bernard;Scientific Reports,2016

3. Phylogeny reconstruction with alignment-free method that corrects for horizontal gene transfer;Bromberg;PLOS Comput. Biol,2016

4. Chatterji S. . (2008) Research in Computational Molecular Biology: 12th Annual International Conference, RECOMB 2008, Singapore, March 30 – April 2, 2008. Proceedings, pp. 17–28. Springer, Berlin. Heidelberg.

5. Chiaromonte F. . (2002) Scoring pairwise genomic sequence alignments. In: Altman R.B. . (eds) Pacific Symposium on Biocomputing. World Scientific, Singapore, pp. 115–126.

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