DEEPre: sequence-based enzyme EC number prediction by deep learning-Reference-Cited by-同舟云学术

DEEPre: sequence-based enzyme EC number prediction by deep learning

Published:2017-10-23 Issue:5 Volume:34 Page:760-769
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Li Yu¹,Wang Sheng¹,Umarov Ramzan¹,Xie Bingqing²,Fan Ming³,Li Lihua³,Gao Xin¹

Affiliation:

1. Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), Computer, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

2. Computer Science Department, Illinois Institute of Technology, Chicago, IL, USA

3. Institute of Biomedical Engineering and Instrumentation, Hangzhou Dianzi University, Hangzhou, China

Funder

King Abdullah University of Science and Technology

KAUST

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/5/760/25117683/btx680.pdf

Reference79 articles.

1. Tensorflow: Learning functions at scale;Abadi;Acm Sigplan. Notices,2016

2. Predicting the sequence specificities of dna- and rna-binding proteins by deep learning;Alipanahi;Nat. Biotechnol,2015

3. Gapped blast and psi-blast: a new generation of protein database search programs;Altschul;Nucleic Acids Res,1997

4. Eficaz2: enzyme function inference by a combined approach enhanced by machine learning;Arakaki;BMC Bioinformatics,2009

5. The swiss-prot protein sequence database and its supplement trembl in 2000;Bairoch;Nucleic Acids Res,2000

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