Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection

Author:

Carlisle Louisa A12,Turk Teja12,Kusejko Katharina12,Metzner Karin J12,Leemann Christine12,Schenkel Corinne D12,Bachmann Nadine12ORCID,Posada Susana34,Beerenwinkel Niko34,Böni Jürg25,Yerly Sabine6,Klimkait Thomas7,Perreau Matthieu8,Braun Dominique L12,Rauch Andri9,Calmy Alexandra6,Cavassini Matthias10,Battegay Manuel11,Vernazza Pietro12,Bernasconi Enos13,Günthard Huldrych F12,Kouyos Roger D12,Anagnostopoulos A,Battegay M,Bernasconi E,Böni J,Braun D L,Bucher H C,Calmy A,Cavassini M,Ciuffi A,Dollenmaier G,Egger M,Elzi L,Fehr J,Fellay J,Furrer H,Fux C A,Günthard H F,Haerry D,Hasse B,Hirsch H H,Hoffmann M,Hösli I,Huber M,Kahlert C,Kaiser L,Keiser O,Klimkait T,Kouyos R D,Kovari H,Ledergerber B,Martinetti G,Martinez de Tejada B,Marzolini C,Metzner K J,Müller N,Nicca D,Paioni P,Pantaleo G,Perreau M,Rauch A,Rudin C,Scherrer A U,Schmid P,Speck R,Stöckle M,Tarr P,Trkola A,Vernazza P,Wandeler G,Weber R,Yerly S,

Affiliation:

1. Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich

2. Institute of Medical Virology, University of Zurich, Zurich

3. Department of Biosystems Science and Engineering, ETH Zurich

4. SIB Swiss Institute of Bioinformatics, University of Basel, Basel

5. Swiss National Center for Retroviruses, University of Zurich, Zurich

6. Laboratory of Virology and Division of Infectious Diseases, Geneva University Hospital, Geneva

7. Molecular Virology, Department of Biomedicine–Petersplatz, University of Basel, Basel

8. Division of Immunology and Allergy, Lausanne University Hospital, Lausanne

9. Department of Infectious Diseases, Bern University Hospital, University of Bern, Bern

10. Division of Infectious Diseases, Lausanne University Hospital, Lausanne

11. Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel

12. Division of Infectious Diseases, Cantonal Hospital St. Gallen, St. Gallen

13. Division of Infectious Diseases, Regional Hospital Lugano, Lugano, Switzerland

Funder

Swiss National Science Foundation

Swiss HIV Cohort Study

Yvonne Jacob Foundation

Publisher

Oxford University Press (OUP)

Subject

Infectious Diseases,Immunology and Allergy

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