Kinetics of the Severe Acute Respiratory Syndrome Coronavirus 2 Antibody Response and Serological Estimation of Time Since Infection

Author:

Pelleau Stéphane12,Woudenberg Tom12,Rosado Jason123,Donnadieu Françoise12,Garcia Laura12,Obadia Thomas124,Gardais Soazic2,Elgharbawy Yasmine2,Velay Aurelie56,Gonzalez Maria7,Nizou Jacques Yves8,Khelil Nizar8,Zannis Konstantinos8,Cockram Charlotte9,Merkling Sarah Hélène10,Meola Annalisa11,Kerneis Solen121314,Terrier Benjamin1516,de Seze Jerome17,Planas Delphine18,Schwartz Olivier18,Dejardin François19,Petres Stéphane19,von Platen Cassandre20,Pellerin Sandrine Fernandes20,Arowas Laurence21,de Facci Louise Perrin21,Duffy Darragh22ORCID,Cheallaigh Clíona Ní2324,Dunne Jean2526,Conlon Niall2526,Townsend Liam2324ORCID,Duong Veasna27,Auerswald Heidi27,Pinaud Laurie28,Tondeur Laura28,Backovic Marija11,Hoen Bruno29,Fontanet Arnaud2830,Mueller Ivo23132,Fafi-Kremer Samira56,Bruel Timothée1833,White Michael12

Affiliation:

1. Infectious Disease Epidemiology and Analytics Unit, Department of Global Health, Institut Pasteur, Paris, France

2. Malaria: Parasites and Hosts Unit, Department of Parasites and Insect Vectors, Institut Pasteur, Paris, France

3. Sorbonne Université, Paris, France

4. Hub de Bioinformatique et Biostatistique, Département Biologie Computationnelle, Institut Pasteur, Paris, France

5. Centres Hospitaliers et Universitaires de Strasbourg, Laboratoire de Virologie, Strasbourg, France

6. Université de Strasbourg, Inserm, Immuno-Rhumathologie moléculaire Unité Mixte de Recherche_S 1109, Strasbourg, France

7. Centres Hospitaliers et Universitaires de Strasbourg, Service de Pathologies Professionnelles, Strasbourg, France

8. Institut Mutualiste Montsouris, Paris, France

9. Spatial Regulation of Genomes Unit, Department of Genomes and Genetics, Institut Pasteur, Paris, France

10. Insect-Virus Interactions Unit, Department of Virology and French National Center for Scientific Research Unité Mixte de Recherche 2000, Institut Pasteur, Paris, France

11. Structural Virology Unit, Department of Virology and French National Center for Scientific Research Unité Mixte de Recherche 3569, Institut Pasteur, Paris, France

12. Equipe de Prévention du Risque Infectieux, Assistance Publique – Hôpitaux de Paris, Hôpital Bichat, Paris, France

13. Université de Paris, Inserm, Infection Antimicrobials Modelling Evolution, Paris, France

14. Epidemiology and Modelling of Antibiotic Evasion, Institut Pasteur, Paris, France

15. Department of Internal Medicine, National Referral Center for Rare Systemic Autoimmune Diseases, Assistance Publique Hôpitaux de Paris-Centre, Université de Paris, Paris,France

16. Paris-Centre de Recherche Cardiovasculaire, Inserm U970, Paris, France

17. Centre d’Investigation Clinique, Inserm CIC-1434, Strasbourg, France

18. Virus and Immunity Unit, Department of Virology, Institut Pasteur, Paris, France

19. Production and Purification of Recombinant Proteins Technological Platform, Center for Technological Resources and Research, Institut Pasteur, Paris, France

20. Center for Translational Science, Institut Pasteur, Paris, France

21. Investigation Clinique et Accès aux Ressources Biologiques, Center for Translational Research, Institut Pasteur, Paris, France

22. Translational Immunology Laboratory, Institut Pasteur, Paris, France

23. Department of Infectious Diseases, St James’s Hospital, Dublin, Ireland

24. Department of Clinical Medicine, School of Medicine, Trinity Translational Medicine Institute, Trinity College, Dublin,Ireland

25. Department of Immunology, St James’s Hospital, Dublin, Ireland

26. Department of Immunology, School of Medicine, Trinity College, Dublin,Ireland

27. Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, Phnom Penh,Cambodia

28. Epidemiology of Emerging Diseases Unit, Department of Global Health, Institut Pasteur, Paris, France

29. Direction de la Recherche Médicale, Centre de Recherche Translationelle, Institut Pasteur, Paris, France

30. Conservatoire National des Arts et Métiers, Paris, France

31. Division of Population Health and Immunity, Walter and Eliza Hall Institute, Melbourne, Australia

32. Department of Medical Biology, University of Melbourne, Melbourne, Australia

33. Vaccine Research Institute, Creteil, France

Abstract

Abstract Background Infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) induces a complex antibody response that varies by orders of magnitude between individuals and over time. Methods We developed a multiplex serological test for measuring antibodies to 5 SARS-CoV-2 antigens and the spike proteins of seasonal coronaviruses. We measured antibody responses in cohorts of hospitalized patients and healthcare workers followed for up to 11 months after symptoms. A mathematical model of antibody kinetics was used to quantify the duration of antibody responses. Antibody response data were used to train algorithms for estimating time since infection. Results One year after symptoms, we estimate that 36% (95% range, 11%–94%) of anti-Spike immunoglobulin G (IgG) remains, 31% (95% range, 9%–89%) anti-RBD IgG remains, and 7% (1%–31%) of anti-nucleocapsid IgG remains. The multiplex assay classified previous infections into time intervals of 0–3 months, 3–6 months, and 6–12 months. This method was validated using data from a seroprevalence survey in France, demonstrating that historical SARS-CoV-2 transmission can be reconstructed using samples from a single survey. Conclusions In addition to diagnosing previous SARS-CoV-2 infection, multiplex serological assays can estimate the time since infection, which can be used to reconstruct past epidemics.

Funder

European Research Council

Agence Nationale de la Recherche

Fondation pour la Recherche Médicale

Wellcome Trust

Health Research Board

National Health and Medical Research Council

Science Foundation Ireland

Publisher

Oxford University Press (OUP)

Subject

Infectious Diseases,Immunology and Allergy

Reference31 articles.

1. Estimating the burden of SARS-CoV-2 in France;Salje;Science,2020

2. Prevalence of SARS-CoV-2 antibodies in France: results from nationwide serological surveillance;Le Vu;Nat Commun,2021

3. Declining prevalence of antibody positivity to SARS-CoV-2: a community study of 365,000 adults;Ward;medRxiv [Preprint]. Posted online 27 October,2020

4. Seroprevalence of anti-SARS-CoV-2 IgG antibodies among truck drivers and assistants in Kenya;Kagucia;medRxiv [Preprint],2021

5. Multiplex assays for the identification of serological signatures of SARS-CoV-2 infection: an antibody-based diagnostic and machine learning study;Rosado;Lancet Microbe,2021

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