RNF8 ubiquitylation of XRN2 facilitates R-loop resolution and restrains genomic instability in BRCA1 mutant cells

Author:

Krishnan Rehna1,Lapierre Mariah12,Gautreau Brandon12,Nixon Kevin C J1,El Ghamrasni Samah1,Patel Parasvi S13ORCID,Hao Jun1,Yerlici V Talya2,Guturi Kiran Kumar Naidu1,St-Germain Jonathan1,Mateo Francesca4,Saad Amine5,Algouneh Arash1,Earnshaw Rebecca1,Shili Duan1,Seitova Alma6,Miller Joshua1,Khosraviani Negin2ORCID,Penn Adam1,Ho Brandon7,Sanchez Otto8,Hande M Prakash9,Masson Jean-Yves10ORCID,Brown Grant W7,Alaoui-Jamali Moulay5,Reynolds John J11ORCID,Arrowsmith Cheryl136,Raught Brian13,Pujana Miguel A4,Mekhail Karim2,Stewart Grant S11,Hakem Anne1,Hakem Razqallah123ORCID

Affiliation:

1. Princess Margaret Cancer Centre, University Health Network , Toronto , Ontario  M5G 1L7 , Canada

2. Department of Laboratory Medicine and Pathobiology, University of Toronto , Toronto , Ontario  M5S 1A8 , Canada

3. Department of Medical Biophysics, University of Toronto , Ontario  M5G 1L7 , Canada

4. Program Against Cancer Therapeutic Resistance (ProCURE), Catalan Institute of Oncology (ICO), Bellvitge Institute for Biomedical Research (IDIBELL), L’Hospitalet del Llobregat , Barcelona  08908 , Catalonia, Spain

5. Segal Cancer Centre and Lady Davis Institute for Medical Research, Departments of Medicine and Oncology, Faculty of Medicine, McGill University , Montreal , Quebec , Canada

6. Structural Genomics Consortium, University of Toronto , Toronto , ON  M5G 1L7 , Canada

7. Department of Biochemistry and Donnelly Centre, University of Toronto , Toronto , Ontario , Canada

8. Ontario Tech University , 2000 Simcoe Street North Oshawa , Ontario  L1G 0C5, Canada

9. Department of Physiology, Yong Loo Lin School of Medicine, National University of Singapore , Singapore

10. Genome Stability Laboratory, CHU de Québec Research Center, Oncology Axis; Department of Molecular Biology, Medical Biochemistry and Pathology; Laval University Cancer Research Center , 9 McMahon, Québec City, Québec G1R 2J6, Canada

11. Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham , Birmingham , UK

Abstract

Abstract Breast cancer linked with BRCA1/2 mutations commonly recur and resist current therapies, including PARP inhibitors. Given the lack of effective targeted therapies for BRCA1-mutant cancers, we sought to identify novel targets to selectively kill these cancers. Here, we report that loss of RNF8 significantly protects Brca1-mutant mice against mammary tumorigenesis. RNF8 deficiency in human BRCA1-mutant breast cancer cells was found to promote R-loop accumulation and replication fork instability, leading to increased DNA damage, senescence, and synthetic lethality. Mechanistically, RNF8 interacts with XRN2, which is crucial for transcription termination and R-loop resolution. We report that RNF8 ubiquitylates XRN2 to facilitate its recruitment to R-loop-prone genomic loci and that RNF8 deficiency in BRCA1-mutant breast cancer cells decreases XRN2 occupancy at R-loop-prone sites, thereby promoting R-loop accumulation, transcription-replication collisions, excessive genomic instability, and cancer cell death. Collectively, our work identifies a synthetic lethal interaction between RNF8 and BRCA1, which is mediated by a pathological accumulation of R-loops.

Funder

Canadian Institute of Health Research

Canadian Cancer Society

Worldwide Cancer Research

Carlos III Institute of Health

Generalitat de Catalunya SGR

CERCA

Quebec Breast Cancer Foundation

Cancer Research UK programme

Princess Margaret Cancer Foundation

Hold’Em for Life Foundation

Strategic Training in Transdisciplinary Radiation Science for the 21st Century

Princess Margaret Cancer Foundation and CIHR fellowship

University of Birmingham

Natural Sciences and Engineering Research Council of Canada

Structural Genomics Consortium

Ontario Genomics Institute

Publisher

Oxford University Press (OUP)

Subject

Genetics

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