EMDB—the Electron Microscopy Data Bank

Author:

,Turner JackORCID,Abbott Sanja,Fonseca Neli,Pye Ryan,Carrijo Lucas,Duraisamy Amudha Kumari,Salih Osman,Wang Zhe,Kleywegt Gerard J,Morris Kyle LORCID,Patwardhan ArdanORCID,Burley Stephen KORCID,Crichlow GreggORCID,Feng ZukangORCID,Flatt Justin W,Ghosh Sutapa,Hudson Brian PORCID,Lawson Catherine L,Liang YuheORCID,Peisach EzraORCID,Persikova Irina,Sekharan MonicaORCID,Shao ChenghuaORCID,Young JasmineORCID,Velankar SameerORCID,Armstrong DavidORCID,Bage Marcus,Bueno Wesley Morellato,Evans Genevieve,Gaborova Romana,Ganguly Sudakshina,Gupta Deepti,Harrus Deborah,Tanweer Ahsan,Bansal ManjuORCID,Rangannan Vetriselvi,Kurisu GenjiORCID,Cho Hasumi,Ikegawa Yasuyo,Kengaku Yumiko,Kim Ju Yaen,Niwa Satomi,Sato Junko,Takuwa Ayako,Yu Jian,Hoch Jeffrey CORCID,Baskaran Kumaran,Xu Wenqing,Zhang Weizhe,Ma Xiaodan

Abstract

Abstract The Electron Microscopy Data Bank (EMDB) is the global public archive of three-dimensional electron microscopy (3DEM) maps of biological specimens derived from transmission electron microscopy experiments. As of 2021, EMDB is managed by the Worldwide Protein Data Bank consortium (wwPDB; wwpdb.org) as a wwPDB Core Archive, and the EMDB team is a core member of the consortium. Today, EMDB houses over 30 000 entries with maps containing macromolecules, complexes, viruses, organelles and cells. Herein, we provide an overview of the rapidly growing EMDB archive, including its current holdings, recent updates, and future plans.

Funder

European Molecular Biology Laboratory

European Bioinformatics Institute

Wellcome Trust

Biotechnology and Biological Sciences Research Council

National Science Foundation

US Department of Energy

National Cancer Institute

National Institute of Allergy and Infectious Diseases

National Institute of General Medical Sciences

National Institutes of Health

UK Biotechnology and Biological Research Council

new Mol* features

Department of NBDC program, Japan Science and Technology Agency

AMED

Institute for Protein Research, Osaka University

Shanghai Advanced Research Institute (SARI), Chinese Academy of Sciences and the ShanghaiTech University

Ministry of Electronics and Information Technology

National Supercomputing Mission program

Indian National Science Academy

Publisher

Oxford University Press (OUP)

Subject

Genetics

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