Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge-Reference-Cited by-同舟云学术

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Published:2024-06-25 Issue:7 Volume:21 Page:1340-1348
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Lawson Catherine L.^ORCID,Kryshtafovych Andriy^ORCID,Pintilie Grigore D.,Burley Stephen K.,Černý Jiří^ORCID,Chen Vincent B.^ORCID,Emsley Paul,Gobbi Alberto,Joachimiak Andrzej^ORCID,Noreng Sigrid,Prisant Michael G.,Read Randy J.^ORCID,Richardson Jane S.^ORCID,Rohou Alexis L.^ORCID,Schneider Bohdan^ORCID,Sellers Benjamin D.^ORCID,Shao Chenghua,Sourial Elizabeth,Williams Chris I.,Williams Christopher J.^ORCID,Yang Ying,Abbaraju Venkat,Afonine Pavel V.,Baker Matthew L.^ORCID,Bond Paul S.^ORCID,Blundell Tom L.^ORCID,Burnley Tom^ORCID,Campbell Arthur,Cao Renzhi^ORCID,Cheng Jianlin^ORCID,Chojnowski Grzegorz^ORCID,Cowtan K. D.^ORCID,DiMaio Frank^ORCID,Esmaeeli Reza,Giri Nabin^ORCID,Grubmüller Helmut^ORCID,Hoh Soon Wen^ORCID,Hou Jie^ORCID,Hryc Corey F.,Hunte Carola^ORCID,Igaev Maxim^ORCID,Joseph Agnel P.^ORCID,Kao Wei-Chun^ORCID,Kihara Daisuke^ORCID,Kumar Dilip^ORCID,Lang Lijun^ORCID,Lin Sean,Maddhuri Venkata Subramaniya Sai R.^ORCID,Mittal Sumit^ORCID,Mondal Arup,Moriarty Nigel W.,Muenks Andrew,Murshudov Garib N.,Nicholls Robert A.^ORCID,Olek Mateusz,Palmer Colin M.^ORCID,Perez Alberto^ORCID,Pohjolainen Emmi,Pothula Karunakar R.,Rowley Christopher N.,Sarkar Daipayan^ORCID,Schäfer Luisa U.,Schlicksup Christopher J.,Schröder Gunnar F.^ORCID,Shekhar Mrinal,Si Dong^ORCID,Singharoy Abhishek^ORCID,Sobolev Oleg V.^ORCID,Terashi Genki^ORCID,Vaiana Andrea C.^ORCID,Vedithi Sundeep C.^ORCID,Verburgt Jacob,Wang Xiao^ORCID,Warshamanage Rangana,Winn Martyn D.^ORCID,Weyand Simone,Yamashita Keitaro^ORCID,Zhao Minglei,Schmid Michael F.^ORCID,Berman Helen M.,Chiu Wah^ORCID

Publisher

Springer Science and Business Media LLC

Link

https://www.nature.com/articles/s41592-024-02321-7.pdf

Reference91 articles.

1. Adams, P. D. et al. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure 24, 502–508 (2016).

2. Gore, S. et al. Validation of structures in the Protein Data Bank. Structure 25, 1916–1927 (2017).

3. Smart, O. S. et al. Validation of ligands in macromolecular structures determined by X-ray crystallography. Acta Crystallogr. D. Struct. Biol. 74, 228–236 (2018).

4. Feng, Z. et al. Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank. Structure 29, 393–400.e1 (2021).

5. Lawson, C. L., Berman, H. M. & Chiu, W. Evolving data standards for cryo-EM structures. Struct. Dyn. 7, 014701 (2020).

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