MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells

Author:

Sumida Noriyuki1ORCID,Sifakis Emmanouil G1ORCID,Kiani Narsis A1,Ronnegren Anna Lewandowska1,Scholz Barbara A1,Vestlund Johanna12,Gomez-Cabrero David23,Tegner Jesper245,Göndör Anita1,Ohlsson Rolf1ORCID

Affiliation:

1. Department of Oncology-Pathology, Karolinska Institutet, Karolinska University Hospital, Z1:00, SE-171 76 Stockholm, Sweden

2. Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, L8:05, SE-171 76, Stockholm, Sweden

3. Mucosal and Salivary Biology Division, King's College London Dental Institute, London SE1 9RT, UK

4. Science for Life Laboratory, Tomtebodavägen 23A, SE-17165, Solna, Sweden

5. Biological and Environmental Sciences and Engineering Division, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia

Abstract

Abstract The relationship between stochastic transcriptional bursts and dynamic 3D chromatin states is not well understood. Using an innovated, ultra-sensitive technique, we address here enigmatic features underlying the communications between MYC and its enhancers in relation to the transcriptional process. MYC thus interacts with its flanking enhancers in a mutually exclusive manner documenting that enhancer hubs impinging on MYC detected in large cell populations likely do not exist in single cells. Dynamic encounters with pathologically activated enhancers responsive to a range of environmental cues, involved <10% of active MYC alleles at any given time in colon cancer cells. Being the most central node of the chromatin network, MYC itself likely drives its communications with flanking enhancers, rather than vice versa. We submit that these features underlie an acquired ability of MYC to become dynamically activated in response to a diverse range of environmental cues encountered by the cell during the neoplastic process.

Funder

Swedish Research Council

Swedish Childhood Cancer Foundation

Swedish Cancer Society

Lundberg Foundation

Karolinska Institutet

Novo Nordisk Foundation

Cancer Society in Stockholm

KA Wallenberg Foundation

Publisher

Oxford University Press (OUP)

Subject

Genetics

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