PhycoCosm, a comparative algal genomics resource

Author:

Grigoriev Igor V123ORCID,Hayes Richard D1ORCID,Calhoun Sara13ORCID,Kamel Bishoy13ORCID,Wang Alice12,Ahrendt Steven1ORCID,Dusheyko Sergey1,Nikitin Roman1,Mondo Stephen J1ORCID,Salamov Asaf1ORCID,Shabalov Igor1,Kuo Alan1ORCID

Affiliation:

1. US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA

2. Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA

3. Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA

Abstract

Abstract Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all eukaryotic lineages of life and collectively responsible for ∼50% of photosynthesis on Earth. Sequenced algal genomes, critical to understanding their complex biology, are growing in number and require efficient tools for analysis. PhycoCosm (https://phycocosm.jgi.doe.gov) is an algal multi-omics portal, developed by the US Department of Energy Joint Genome Institute to support analysis and distribution of algal genome sequences and other ‘omics’ data. PhycoCosm provides integration of genome sequence and annotation for >100 algal genomes with available multi-omics data and interactive web-based tools to enable algal research in bioenergy and the environment, encouraging community engagement and data exchange, and fostering new sequencing projects that will further these research goals.

Funder

U.S. Department of Energy

Publisher

Oxford University Press (OUP)

Subject

Genetics

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