Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo

Author:

Dinh Vu1,Darling Aaron E2,Matsen IV Frederick A3

Affiliation:

1. Department of Mathematical Sciences, University of Delaware, 312 Ewing Hall, Newark, DE 19716, USA

2. The ithree institute, University of Technology Sydney, 15 Broadway, Ultimo NSW 2007, Australia

3. Program in Computational Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA

Funder

National Science Foundation

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Reference35 articles.

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2. Sequential Monte Carlo methods for optimal filtering.;Andrieu,,2001

3. Curse-of-dimensionality revisited: collapse of the particle filter in very large scale systems.;Bengtsson,;Probability and Statistics: Essays in Honor of David A. Freedman,2008

4. Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood.;Berger,;Syst. Biol.,2011

5. On the stability of sequential Monte Carlo methods in high dimensions.;Beskos,;Ann. Appl. Probab.,2014

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