Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae

Author:

Thorpe Peter1,Vetukuri Ramesh R2,Hedley Pete E3,Morris Jenny3,Whisson Maximilian A4,Welsh Lydia R J3,Whisson Stephen C3ORCID

Affiliation:

1. School of Medicine, University of St Andrews, North Haugh, St Andrews KY16 9TF, UK

2. Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, SE-234 22, Sweden

3. Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK

4. Independent, Dundee DD5 4QT, UK

Abstract

Abstract Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40 Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis.

Funder

Scottish Government Rural and Environment Science and Analytical Services Division

Wellcome Trust ISSF

Swedish Research Council Formas

Helge Ax:son Johnsons foundation

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology

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