A Simple and Faster Branch-and-Bound Algorithm for Finding a Maximum Clique with Computational Experiments

Author:

TOMITA Etsuji123,SUTANI Yoichi14,HIGASHI Takanori15,WAKATSUKI Mitsuo16

Affiliation:

1. Advanced Algorithms Research Laboratory, The University of Electro-Communications

2. JST ERATO Minato Discrete Structure Manipulation System Project

3. Tokyo Institute of Technology

4. Sony Corporation

5. Japan Systems Co., Ltd.

6. Graduate School of Informatics and Engineering, The University of Electro-Communications

Publisher

Institute of Electronics, Information and Communications Engineers (IEICE)

Subject

Artificial Intelligence,Electrical and Electronic Engineering,Computer Vision and Pattern Recognition,Hardware and Architecture,Software

Reference52 articles.

1. [1] T. Akutsu, M. Hayashida, D.K.C. Bahadur, E. Tomita, J. Suzuki, and K. Horimoto, “Dynamic programming and clique based approaches for protein threading with profiles and constraints,” IEICE Trans. Fundamentals, vol.E89-A, no.5, pp.1215-1222, May 2006.

2. [2] D.K.C. Bahadur, T. Akutsu, E. Tomita, T. Seki, and A. Fujiyama, “Point matching under non-uniform distortions and protein side chain packing based on efficient maximum clique algorithms,” Genome Inform., vol.13, pp.143-152, 2002.

3. [3] D.K.C. Bahadur, E. Tomita, J. Suzuki, K. Horimoto, and T. Akutsu, “Protein side-chain packing problem: A maximum edge-weight clique algorithmic approach.” J. Bioinform. and Comput. Biol., vol.3, pp.103-126, 2005.

4. [4] D.K.C. Bahadur, E. Tomita., J. Suzuki, K. Horimoto, and T. Akutsu, “Protein threading with profiles and distance constraints using clique based algorithms,” J. Bioinform. and Comput. Biol., vol.4, pp.19-42, 2006.

5. [5] E. Balas, S. Ceria, G. Cornuéjols, and G. Pataki, “Polyhedral methods for the maximum clique problem,” in DIMACS Series in Discrete Mathematics and Theoretical Computer Science, vol.26, ed. D.S. Johnson and M.A. Trick, pp.11-28, 1996.

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