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MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics

  • Published:2021-11-01 Issue:11 Volume:28 Page:1052-1062
  • ISSN:1557-8666
  • Container-title:Journal of Computational Biology
  • language:en
  • Short-container-title:Journal of Computational Biology

Author:

Andreace Francesco1,Pizzi Cinzia1,Comin Matteo1ORCID

Affiliation:

1. Department of Information Engineering, University of Padova, Padova, Italy.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Cited by 6 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs;Journal of Computational Biology;2023-05-01

2. USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs;Bioinformatics Research and Applications;2023

3. Binning long reads in metagenomics datasets using composition and coverage information;Algorithms for Molecular Biology;2022-07-11

4. A Deep Embedded Clustering Algorithm for the Binning of Metagenomic Sequences;IEEE Access;2022

5. Efficient k-mer Indexing with Application to Mapping-free SNP Genotyping;Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies;2022
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