USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs
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Publisher
Springer Nature Singapore
Link
https://link.springer.com/content/pdf/10.1007/978-981-99-7074-2_16
Reference27 articles.
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2. Bankevich, A., et al.: Spades: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19(5), 455–477 (2012)
3. Bradley, P., Den Bakker, H.C., Rocha, E.P., McVean, G., Iqbal, Z.: Ultrafast search of all deposited bacterial and viral genomic data. Nat. Biotechnol. 37(2), 152–159 (2019)
4. Břinda, K., Baym, M., Kucherov, G.: Simplitigs as an efficient and scalable representation of de Bruijn graphs. Genome Biol. 22(1), 1–24 (2021)
5. Cavattoni, M., Comin, M.: Classgraph: improving metagenomic read classification with overlap graphs. J. Comput. Biol. 30(6), 633–647 (2023). https://doi.org/10.1089/cmb.2022.0208, pMID: 37023405
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