MONI: A Pangenomic Index for Finding Maximal Exact Matches-Reference-Cited by-同舟云学术

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MONI: A Pangenomic Index for Finding Maximal Exact Matches

Published:2022-02-01 Issue:2 Volume:29 Page:169-187
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Rossi Massimiliano¹^ORCID,Oliva Marco¹^ORCID,Langmead Ben²^ORCID,Gagie Travis³^ORCID,Boucher Christina¹^ORCID

Affiliation:

1. Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, USA.

2. Department of Computer Science, John Hopkins University, Baltimore, Maryland, USA.

3. Faculty of Computer Science, Dalhousie University, Halifax, Canada.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2021.0290

Reference36 articles.

1. PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index

2. Refining the r-index

3. Burrows, M., and Wheeler, D.J. 1994. A block sorting lossless data compression algorithm. Technical Report 124, Digital Equipment Corporation.

4. STAR: ultrafast universal RNA-seq aligner

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2. Sigmoni: classification of nanopore signal with a compressed pangenome index;Bioinformatics;2024-06-28

3. b-move: faster bidirectional character extensions in a run-length compressed index;2024-06-02

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