Exact Calculation of Distributions on Integers, with Application to Sequence Alignment-Reference-Cited by-同舟云学术

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Exact Calculation of Distributions on Integers, with Application to Sequence Alignment

Published:2009-01 Issue:1 Volume:16 Page:1-18
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Newberg Lee A.¹²,Lawrence Charles E.³

Affiliation:

1. Center for Bioinformatics, Wadsworth Center, New York State Department of Health, Albany, New York.

2. Department of Computer Science, Rensselaer Polytechnic Institute, Troy, New York.

3. Center for Computational Molecular Biology, Brown University, Providence, Rhode Island.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2008.0137

Reference13 articles.

1. PhyloScan: identification of transcription factor binding sites using cross-species evidence

2. Centroid estimation in discrete high-dimensional spaces with applications in biology

3. RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

4. Clustering of RNA Secondary Structures with Application to Messenger RNAs

5. Evolution of genes and genomes on the Drosophila phylogeny

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1. RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp;BMC Bioinformatics;2020-05-24

2. RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp;2019-05-31

3. RNA Structure Prediction;Encyclopedia of Bioinformatics and Computational Biology;2019

4. Supervised learning on synthetic data for reverse engineering gene regulatory networks from experimental time-series;2018-06-27

5. Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities;BMC Bioinformatics;2018-02

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