Bayesian Estimation of Three-Dimensional Chromosomal Structure from Single-Cell Hi-C Data-Reference-Cited by-同舟云学术

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Bayesian Estimation of Three-Dimensional Chromosomal Structure from Single-Cell Hi-C Data

Published:2019-11-01 Issue:11 Volume:26 Page:1191-1202
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Rosenthal Michael¹,Bryner Darshan¹,Huffer Fred²,Evans Shane³,Srivastava Anuj²,Neretti Nicola³⁴

Affiliation:

1. Science and Technology Department, Naval Surface Warfare Center, Panama City Division, Panama City, Florida.

2. Department of Statistics, Florida State University, Tallahassee, Florida.

3. Center for Computational Molecular Biology, Brown University, Providence, Rhode Island.

4. Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modelling and Simulation

Link

https://www.liebertpub.com/doi/pdf/10.1089/cmb.2019.0100

Reference26 articles.

1. Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing

2. Genome structure determination via 3C-based data integration by the Integrative Modeling Platform

3. Chromatin architecture reorganization during stem cell differentiation

4. Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

Cited by 35 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Single-cell omics: experimental workflow, data analyses and applications;Science China Life Sciences;2024-07-23

2. CTPredictor: A comprehensive and robust framework for predicting cell types by integrating multi-scale features from single-cell Hi-C data;Computers in Biology and Medicine;2024-05

3. Application of Dimension Reduction Methods to High-Dimensional Single-Cell 3D Genomic Contact Data;IECE Transactions on Internet of Things;2024-02-12

4. Chromosome structure modeling tools and their evaluation in bacteria;Briefings in Bioinformatics;2024-01-22

5. Circuit Topology Analysis of Single-Cell HiC Data;Methods in Molecular Biology;2024

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