FSG: Fast String Graph Construction for De Novo Assembly-Reference-Cited by-同舟云学术

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FSG: Fast String Graph Construction for De Novo Assembly

Published:2017-10 Issue:10 Volume:24 Page:953-968
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Bonizzoni Paola¹,Vedova Gianluca Della¹,Pirola Yuri¹,Previtali Marco¹,Rizzi Raffaella¹

Affiliation:

1. Dipartimento di Informatica Sistemistica e Comunicazione, Università degli Studi di Milano-Bicocca, Milan, Italy.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2017.0089

Reference28 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

2. Lightweight algorithms for constructing and inverting the BWT of string collections

3. String graph construction using incremental hashing

4. Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs

5. The Haplotyping problem: An overview of computational models and solutions

Cited by 9 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?;Developments in Language Theory;2022

2. Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly;2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS);2021-05

3. On the longest common prefix of suffixes in an inverse Lyndon factorization and other properties;Theoretical Computer Science;2021-03

4. Lyndon Words versus Inverse Lyndon Words: Queries on Suffixes and Bordered Words;Language and Automata Theory and Applications;2020

5. Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era;Quantitative Biology;2019-12

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