Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?

Author:

Bonizzoni PaolaORCID,De Felice CleliaORCID,Pirola YuriORCID,Rizzi RaffaellaORCID,Zaccagnino RoccoORCID,Zizza RosalbaORCID

Publisher

Springer International Publishing

Reference40 articles.

1. Baaijens, J.A., et al.: Computational graph pangenomics: a tutorial on data structures and their applications. Nat. Comput. (2022). https://doi.org/10.1007/s11047-022-09882-6

2. Bannai, H.I.T., Inenaga, S., Nakashima, Y., Takeda, M., Tsuruta, K.: The “Runs" Theorem. SIAM J. Comput. 46(5), 1501–1514 (2017)

3. Bannai, H., Kärkkäinen, J., Köppl, D., Piatkowski, M.: Indexing the bijective BWT. In: Pisanti, N., Pissis, S.P. (eds.) 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, 18–20 June 2019, Pisa, Italy. LIPIcs, vol. 128, pp. 17:1–17:14 (2019)

4. Bannai, H., Tomohiro, I., Inenaga, S., Nakashima, Y., Takeda, M., Tsuruta, K.: A new characterization of maximal repetitions by Lyndon trees. In: Proceedings of the Twenty-Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2015, San Diego, CA, USA, 4–6 January 2015, pp. 562–571 (2015)

5. Lecture Notes in Computer Science;M-P Béal,1996

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