Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework-Reference-Cited by-同舟云学术

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework

Published:2017-12 Issue:12 Volume:24 Page:1230-1242
ISSN:1557-8666
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Su Wenhe¹,Liao Xiangke¹,Lu Yutong¹,Zou Quan²,Peng Shaoliang¹³

Affiliation:

1. School of Computer Science and Technology, National University of Defense Technology, Changsha, China.

2. School of Computer Science and Technology, Tianjin University, Tianjin, China.

3. College of Computer Science and Electronic Engineering, National Supercomputer Center in Changsha, Hunan University, Changsha, China.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2017.0040

Reference26 articles.

1. Efficient string matching

2. Fast text searching for regular expressions or automaton searching on tries

3. Multiple sequence alignment modeling: methods and applications

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