universalmotif: An R package for biological motif analysis-Reference-Cited by-同舟云学术

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universalmotif: An R package for biological motif analysis

Published:2024-08-19 Issue:100 Volume:9 Page:7012
ISSN:2475-9066
Container-title:Journal of Open Source Software
language:
Short-container-title:JOSS

Author:

Tremblay Benjamin Jean-Marie^ORCID

Publisher

The Open Journal

Link

https://joss.theoj.org/papers/10.21105/joss.07012.pdf

Reference23 articles.

1. RSAT matrix-clustering: Dynamic exploration and redundancy reduction of transcription factor binding motif collections;Castro-Mondragon;Nucleic Acids Research,2017

2. ASTK: A machine learning-based integrative software for alternative splicing analysis;Huang;Advanced Intelligent Systems,2024

3. circRNAprofiler: An r-based computational framework for the downstream analysis of circular RNAs;Aufiero;BMC Bioinformatics,2020

4. Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities;Müller-Dott;Nucleic Acids Research,2023

5. Memes: A motif analysis environment in r using tools from the MEME suite;Nystrom;PLoS Comput Biol,2021

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