ALPPACA - A tooL for Prokaryotic Phylogeny And Clustering Analysis
Author:
Publisher
The Open Journal
Subject
General Earth and Planetary Sciences,General Environmental Science
Link
https://joss.theoj.org/papers/10.21105/joss.04677.pdf
Reference12 articles.
1. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies;Nguyen;Molecular Biology and Evolution,2015
2. Prokka: Rapid prokaryotic genome annotation;Seemann;Bioinformatics,2014
3. Producing polished prokaryotic pangenomes with the Panaroo pipeline;Tonkin-Hill;Genome Biology,2020
4. SeqKit: A cross-platform and ultrafast toolkit for FASTA/Q file manipulation;Shen;PLOS ONE,2016
5. SNP-sites: Rapid efficient extraction of SNPs from multi-FASTA alignments;Page;Microbial Genomics,2016
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