SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments-Reference-Cited by-同舟云学术

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SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Published:2016-04-29 Issue:4 Volume:2 Page:
ISSN:2057-5858
Container-title:Microbial Genomics
language:en
Short-container-title:

Author:

Page Andrew J.¹,Taylor Ben¹,Delaney Aidan J.²,Soares Jorge¹,Seemann Torsten³,Keane Jacqueline A.¹,Harris Simon R.¹

Affiliation:

1. 1 Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK

2. 2 Computing, Engineering and Mathematics, University of Brighton, Moulsecoomb, Brighton, BN2 4GJ, UK

3. 3 Victorian Life Sciences Computation Initiative, The University of Melbourne, Parkville, Australia

Publisher

Microbiology Society

Subject

General Medicine

Reference20 articles.

1. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

2. Second-generation PLINK: rising to the challenge of larger and richer datasets

3. Dense genomic sampling identifies highways of pneumococcal recombination

4. The variant call format and VCFtools

5. MUSCLE: multiple sequence alignment with high accuracy and high throughput

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