OPUS-Rota: A fast and accurate method for side-chain modeling
Author:
Publisher
Wiley
Subject
Molecular Biology,Biochemistry
Reference48 articles.
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2. A semidefinite programming approach to side chain positioning with new rounding strategies;Chazelle;INFORMS Journal on Computing,2004
3. A merge-decoupling dead end elimination algorithm for protein side-chain conformation;Chong;Int. J. Data Min. Bioinformatics,2007
4. All in one: A highly detailed rotamer library improves both accuracy and speed in the modelling of side chains by dead-end elimination;DeMaeyer;Fold. Des.,1997
5. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization;Desmet;Proteins,2002
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1. OPUS-Rota5: A highly accurate protein side-chain modeling method with 3D-Unet and RotaFormer;Structure;2024-07
2. OPUS-Rota5: A Highly Accurate Protein Side-chain Modeling Method with 3D-Unet and RotaFormer;2023-10-20
3. A simple clustering technique for the design of rotamer libraries based on pairs of consecutive Residues;2023 IEEE International Autumn Meeting on Power, Electronics and Computing (ROPEC);2023-10-18
4. Comparative evaluation of spin-label modeling methods for protein structural studies;Biophysical Journal;2022-09
5. Studying protein–protein interaction through side-chain modeling method OPUS-Mut;Briefings in Bioinformatics;2022-08-12
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