Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer

Author:

Peng Mu1,Wang Dongyu2,Lui Lauren M.3,Nielsen Torben3,Tian Renmao1,Kempher Megan L.1ORCID,Tao Xuanyu1,Pan Chongle2ORCID,Chakraborty Romy4ORCID,Deutschbauer Adam M.35,Thorgersen Michael P.6,Adams Michael W. W.6ORCID,Fields Matthew W.78,Hazen Terry C.910ORCID,Arkin Adam P.311,Zhou Aifen1ORCID,Zhou Jizhong141213

Affiliation:

1. Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, United States

2. Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, United States

3. Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States

4. Earth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, California, United States

5. Department of Plant and Microbial Biology, University of California, Berkeley, California, United States

6. Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, United States

7. Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, United States

8. Center for Biofilm Engineering, Montana State University, Bozeman, Montana, United States

9. Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, United States

10. Oak Ridge National Laboratory, Bioscience Division, Oak Ridge, Tennessee, United States

11. Department of Bioengineering, University of California, Berkeley, California, United States

12. State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China

13. School of Civil Engineering and Environmental Sciences, University of Oklahoma, Norman, Oklahoma, United States

Abstract

Despite the dominance of Rhodanobacter species in the subsurface of the contaminated Oak Ridge Reservation (ORR) site, very little is known about the mechanisms underlying their adaptions to the various stressors present at ORR. Recently, multiple Rhodanobacter strains have been isolated from the ORR groundwater samples from several wells with varying geochemical properties.

Funder

U.S. Department of Energy

Publisher

American Society for Microbiology

Subject

Infectious Diseases,Cell Biology,Microbiology (medical),Genetics,General Immunology and Microbiology,Ecology,Physiology

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