Evolutionary Relationships among Strains of Mycobacterium tuberculosis with Few Copies of IS 6110-Reference-Cited by-同舟云学术

Evolutionary Relationships among Strains of Mycobacterium tuberculosis with Few Copies of IS 6110

Published:2003-04-15 Issue:8 Volume:185 Page:2555-2562
ISSN:0021-9193
Container-title:Journal of Bacteriology
language:en
Short-container-title:J Bacteriol

Author:

Dale Jeremy W.¹,Al-Ghusein Hasan²,Al-Hashmi Salim¹,Butcher Philip²,Dickens Anne L.³,Drobniewski Francis⁴,Forbes Ken J.⁵,Gillespie Stephen H.³,Lamprecht Dianie⁴,McHugh Timothy D.³,Pitman Richard⁶,Rastogi Nalin⁷,Smith Andrew T.¹,Sola Christophe⁷,Yesilkaya Hasan⁵

Affiliation:

1. School of Biomedical and Life Sciences, University of Surrey, Guildford, Surrey GU2 7XH

2. Department of Medical Microbiology, St. George's Hospital Medical School, London SW17 0RE

3. Department of Medical Microbiology, Royal Free and University College Medical School, London NW3 2PF

4. PHLS Mycobacterial Reference Unit, Public Health and Medical Microbiology, Guy's, Kings and St. Thomas' School of Medicine, London SE22 8QF

5. Department of Medical Microbiology, Aberdeen University, Foresterhill, Aberdeen AB25 2ZD

6. Respiratory Division, PHLS Communicable Disease Surveillance Centre, London NW9 5EQ, United Kingdom

7. Unité de la Tuberculose et des Mycobactéries, Institut Pasteur, F-97165 Pointe-à-Pitre Cedex, Guadeloupe, France

Abstract

ABSTRACT Molecular typing of Mycobacterium tuberculosis by using IS 6110 shows low discrimination when there are fewer than five copies of the insertion sequence. Using a collection of such isolates from a study of the epidemiology of tuberculosis in London, we have shown a substantial degree of congruence between IS 6110 patterns and both spoligotype and PGRS type. This indicates that the IS 6110 types mainly represent distinct families of strains rather than arising through the convergent insertion of IS 6110 into favored positions. This is supported by identification of the genomic sites of the insertion of IS 6110 in these strains. The combined data enable identification of the putative evolutionary relationships of these strains, comprising three lineages broadly associated with patients born in South Asia (India and Pakistan), Africa, and Europe, respectively. These lineages appear to be quite distinct from M. tuberculosis isolates with multiple copies of IS 6110 .

Publisher

American Society for Microbiology

Subject

Molecular Biology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/JB.185.8.2555-2562.2003

Reference47 articles.

1. Breathnach, A. S., A. de Ruiter, G. M. Holdsworth, N. T. Bateman, D. G. O'Sullivan, P. J. Rees, D. Snashall, H. J. Milburn, B. S. Peters, J. Watson, F. A. Drobniewski, and G. L. French. 1998. An outbreak of multi-drug-resistant tuberculosis in a London teaching hospital. J. Hosp. Infect.39:111-117.

2. Brosch, R., S. V. Gordon, M. Marmiesse, P. Brodin, C. Buchrieser, K. Eiglmeier, T. Garnier, C. Gutierrez, G. Hewinson, K. Kremer, L. M. Parsons, A. S. Pym, S. Samper, D. van Soolingen, and S. T. Cole. 2002. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc. Natl. Acad. Sci. USA99:3684-3689.

3. Epidemiologic Usefulness of Spoligotyping for Secondary Typing of Mycobacterium tuberculosis Isolates with Low Copy Numbers of IS 6110

4. Dale, J. W., D. Brittain, A. A. Cataldi, D. Cousins, J. T. Crawford, J. Driscoll, H. Heersma, T. Lillebaek, T. Quitugua, N. Rastogi, R. A. Skuce, C. Sola, D. Van Soolingen, and V. Vincent. 2001. Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature. Int. J. Tuberc. Lung Dis.5:216-219.

5. Dale, J. W., T. H. Tang, S. Wall, Z. F. Zainuddin, and B. Plikaytis. 1998. Conservation of IS6110 sequence in strains of Mycobacterium tuberculosis with single and multiple copies. Tuberc. Lung Dis.78:225-227.

Cited by 32 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Evolution, Phylogenetics, and Phylogeography of Mycobacterium tuberculosis complex;Genetics and Evolution of Infectious Diseases;2024

2. Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis;BMC Genomics;2020-11-30

3. Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences inMycobacterium tuberculosis;2019-12-13

4. Diverse Molecular Genotypes ofMycobacterium tuberculosisComplex Isolates Circulating in the Free State, South Africa;International Journal of Microbiology;2016

5. Analysis of IS6110 insertion sites provide a glimpse into genome evolution of Mycobacterium tuberculosis;Scientific Reports;2015-07-28