Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification-Reference-Cited by-同舟云学术

Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification

Published:2024-04-11 Issue:4 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Wang Qiong¹^ORCID,Cole James R.²

Affiliation:

1. Health & Biosciences, International Flavors & Fragrances, Inc., Wilmington, Delaware, USA

2. Department of Plant, Soil and Microbial Sciences, Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA

Abstract

ABSTRACT The RDP Classifier is one of the most popular machine learning approaches for taxonomic classification due to its robustness and relatively high accuracy. Both the RDP taxonomy and RDP Classifier have been updated to incorporate newly described taxa and recent changes to prokaryotic nomenclature.

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.01063-23

Reference10 articles.

1. To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences

2. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

3. Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

4. Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

5. Valid publication of the names of forty-two phyla of prokaryotes

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