Complete Genome Sequence of a Porcine Epidemic Diarrhea S Gene Indel Strain Isolated in France in December 2014

Author:

Grasland Béatrice1,Bigault Lionel1,Bernard Cécilia1,Quenault Hélène1,Toulouse Olivier2,Fablet Christelle3,Rose Nicolas3,Touzain Fabrice1,Blanchard Yannick1

Affiliation:

1. Anses, Laboratory of Ploufragan/Plouzané, Unit of Viral Genetics and Biosafety, Ploufragan, France

2. Clinique VET Flandres, Hazebrouck, France

3. Anses, Laboratory of Ploufragan/Plouzané, Unit of Porcine Epidemiology and Welfare, Ploufragan, France

Abstract

ABSTRACT We report the first and only case of a porcine epidemic diarrhea (PED) outbreak occurring in December 2014 in northern France, and we show using the full-length genome sequence of the French PED virus (PEDV) isolate that it was a PEDV indel strain close to German PEDV strains recently isolated.

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Reference10 articles.

1. Porcine epidemic diarrhoea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines

2. Grasland B, Bigault L, Bernard C, Touzain F, Rose N, Blanchard Y. 2014. Preparedness for potential PED emergence in France: development of diagnostic tools, p 53. In Proceedings of the 8th Annual Meeting of EPIZONE. National Veterinary Institute, Frederiksberg, Denmark.

3. Trimmomatic: a flexible trimmer for Illumina sequence data

4. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

5. progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

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