First Complete Genome Sequence of Arracacha virus A Isolated from a 38-Year-Old Sample from Peru-Reference-Cited by-同舟云学术

First Complete Genome Sequence of Arracacha virus A Isolated from a 38-Year-Old Sample from Peru

Published:2017-05-04 Issue:18 Volume:5 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Adams Ian P.¹,Boonham Neil¹²,Jones Roger A. C.³⁴

Affiliation:

1. Fera, Sand Hutton, York, United Kingdom

2. Institute for Agrifood Research Innovations, Newcastle University, Newcastle upon Tyne, United Kingdom

3. Institute of Agriculture, Faculty of Science, University of Western Australia, Crawley, Western Australia, Australia

4. Department of Agriculture and Food Western Australia, South Perth, Western Australia, Australia

Abstract

ABSTRACT We present here the first complete genomic sequence of Arracacha virus A from a Peruvian arracacha sample collected in 1975 and compare it with the genomes of other nepoviruses. Its RNA1 and RNA2 both had greatest amino acid identities with those of the subgroup A nepovirus Melon mild mottle virus .

Funder

Department for Environment, Food and Rural Affairs

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.00141-17

Reference9 articles.

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2. Jones RAC KentenRH. 1980. Arracacha virus A. Descriptions of plant viruses, No 216. Association of Applied Biologists, Wellesbourne, Warwick, United Kingdom. http://www.dpvweb.net/dpv/showdpv.php?dpvno=216 .

3. Joshi NA FassJN. 2011. Sickle—a windowed adaptive trimming tool for FASTQ files using quality. https://github.com/najoshi/sickle .

4. Full-length transcriptome assembly from RNA-Seq data without a reference genome

5. BLAST+: architecture and applications

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