Full-length transcriptome assembly from RNA-Seq data without a reference genome-Reference-Cited by-同舟云学术

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Published:2011-05-15 Issue:7 Volume:29 Page:644-652
ISSN:1087-0156
Container-title:Nature Biotechnology
language:en
Short-container-title:Nat Biotechnol

Author:

Grabherr Manfred G,Haas Brian J,Yassour Moran,Levin Joshua Z,Thompson Dawn A,Amit Ido,Adiconis Xian,Fan Lin,Raychowdhury Raktima,Zeng Qiandong,Chen Zehua,Mauceli Evan,Hacohen Nir,Gnirke Andreas,Rhind Nicholas,di Palma Federica,Birren Bruce W,Nusbaum Chad,Lindblad-Toh Kerstin,Friedman Nir,Regev Aviv

Publisher

Springer Science and Business Media LLC

Subject

Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology

Link

https://www.nature.com/articles/nbt.1883.pdf

Reference35 articles.

1. Birol, I. et al. De novo transcriptome assembly with ABySS. Bioinformatics 25, 2872–2877 (2009).

2. Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511–515 (2010).

3. Guttman, M. et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol. 28, 503–510 (2010).

4. Haas, B.J. & Zody, M.C. Advancing RNA-Seq analysis. Nat. Biotechnol. 28, 421–423 (2010).

5. Yassour, M. et al. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proc. Natl. Acad. Sci. USA 106, 3264–3269 (2009).

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