Genome Sequences of Anelloviruses, Genomovirus, and Papillomavirus Isolated from Nasal Pharyngeal Swabs

Author:

Collins Courtney L.1,Kraberger Simona1,Fontenele Rafaela S.1,Faleye Temitope O. C.2,Adams Deborah3,Adhikari Sangeet24,Sandrolini Helen5,Finnerty Sarah5,Halden Rolf U.24,Scotch Matthew26ORCID,Varsani Arvind1ORCID

Affiliation:

1. The Biodesign Center for Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA

2. Biodesign Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ, USA

3. Biodesign Center for Personalized Diagnostics, Biodesign Institute, Arizona State University, Tempe, AZ, USA

4. School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ, USA

5. Arizona State University Health Services, Arizona State University, Tempe, AZ, USA

6. College of Health Solutions, Arizona State University, Phoenix, AZ, USA

Abstract

The genome sequences of three anelloviruses (genus Alphatorquevirus ), a genomovirus (genus Gemykolovirus ), and an unclassified papillomavirus were identified in four human nasopharyngeal swabs, and one was positive for influenza A and one for influenza B virus. The influenza B virus-positive sample had a coinfection with an anellovirus and a papillomavirus.

Funder

HHS | National Institutes of Health

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Reference21 articles.

1. Trimmomatic: a flexible trimmer for Illumina sequence data

2. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

3. Basic local alignment search tool

4. Bushnell B. 2014. BBMap: a fast, accurate, splice-aware aligner. Lawrence Berkeley National Lab., Berkeley, CA.

5. Biagini P, Bendinelli M, Hino S, Kakkola L, Mankertz A, Niel C, Okamoto H, Raidal S, Teo CG, Todd D. 2012. Family Anelloviridae, pp 331–341. In King AMQ, Adams EB, Carstens EB, Lefkowitz EJ. (ed) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Academic Press, Waltham, MA.

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