A Whole-Genome-Based Gene-by-Gene Typing System for Standardized High-Resolution Strain Typing of Bacillus anthracis-Reference-Cited by-同舟云学术

A Whole-Genome-Based Gene-by-Gene Typing System for Standardized High-Resolution Strain Typing of Bacillus anthracis

Published:2021-06-18 Issue:7 Volume:59 Page:
ISSN:0095-1137
Container-title:Journal of Clinical Microbiology
language:en
Short-container-title:J Clin Microbiol

Author:

Abdel-Glil Mostafa Y.¹²^ORCID,Chiaverini Alexandra³,Garofolo Giuliano³^ORCID,Fasanella Antonio⁴,Parisi Antonio⁴,Harmsen Dag⁵,Jolley Keith A.⁶,Elschner Mandy C.¹,Tomaso Herbert¹,Linde Jörg¹,Galante Domenico⁴

Affiliation:

1. Institute for Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Jena, Germany

2. Department of Pathology, Faculty of Veterinary Medicine, Zagazig University, Zagazig, Sharkia Province, Egypt

3. Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise G. Caporale, Teramo, Italy

4. Anthrax Reference Institute of Italy, Istituto Zooprofilattico Sperimentale della Puglia e Basilicata, Foggia, Italy

5. Department of Periodontology and Operative Dentistry, University Hospital Muenster, Muenster, Germany

6. Department of Zoology, University of Oxford, Oxford, United Kingdom

Abstract

Whole-genome sequencing (WGS) has been established for bacterial subtyping and is regularly used to study pathogen transmission, to investigate outbreaks, and to perform routine surveillance. Core-genome multilocus sequence typing (cgMLST) is a bacterial subtyping method that uses WGS data to provide a high-resolution strain characterization. This study aimed at developing a novel cgMLST scheme for Bacillus anthracis , a notorious pathogen that causes anthrax in livestock and humans worldwide.

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

Link

https://journals.asm.org/doi/pdf/10.1128/JCM.02889-20

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