Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Kottbus Strain Kharkiv, Isolated from a Commercial Pork Production Facility in Ukraine-Reference-Cited by-同舟云学术

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Kottbus Strain Kharkiv, Isolated from a Commercial Pork Production Facility in Ukraine

Published:2020-12-03 Issue:49 Volume:9 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Arefiev Vasiliy¹,Kovalenko Ganna²,Frant Maciej³,Chumachenko Tetiana⁴,Polyvianna Yuliia⁴,Pivnenko Svitlana⁴,Bolotin Vitaliy¹,Mayboroda Olga¹,Solodiankin Oleksii¹,Tarasov Oleksandr²,Bezyemenni Maksym²,Lyon Cora⁵,Redlinger Matthew⁵,Sapachova Maryna⁶,Mezhenskyi Andrii A.⁶,Ducluzeau Anne-Lise⁷,Bortz Eric²⁵,Gerilovych Anton¹,Drown Devin M.⁷⁸^ORCID

Affiliation:

1. National Scientific Center, Institute of Experimental and Clinical Veterinary Medicine, Kharkiv, Ukraine

2. National Academy of Agrarian Sciences of Ukraine, Institute for Veterinary Medicine, Kyiv, Ukraine

3. National Veterinary Research Institute, Pulawy, Poland

4. Kharkiv National Medical University, State Institution Kharkiv Oblast Laboratory Center of the Ministry of Health of Ukraine, Kharkiv, Ukraine

5. Department of Biological Sciences, University of Alaska Anchorage, Anchorage, Alaska, USA

6. State Scientific Research Institute of Laboratory Diagnostics and Veterinary and Sanitary Expertise, Kyiv, Ukraine

7. Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, USA

8. Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska, USA

Abstract

The complete genome of Salmonella enterica subsp. enterica serovar Kottbus (serogroup C2-C3), which was isolated from a commercial pork production facility in Kharkiv, Ukraine, was assembled using long-read Nanopore sequences. A single circular contig (4,799,045 bp) comprised a complete chromosome encoding antibiotic resistance, highlighting the risk of cross-species livestock and human infection.

Funder

HHS | NIH | National Institute of General Medical Sciences

DOD | Defense Threat Reduction Agency

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.01171-20

Reference7 articles.

1. Assembly of long, error-prone reads using repeat graphs

2. Fast and accurate de novo genome assembly from long uncorrected reads