Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine-Reference-Cited by-同舟云学术

Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine

Published:2019-08-15 Issue:33 Volume:8 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

DasSarma Priya¹,Anton Brian P.²,DasSarma Satyajit L.¹,Martinez Fabiana L.¹³,Guzman Daniel⁴,Roberts Richard J.²,DasSarma Shiladitya¹

Affiliation:

1. Institute of Marine and Environmental Technology, Department of Microbiology and Immunology, University of Maryland, Baltimore, Maryland, USA

2. New England BioLabs, Ipswich, Massachusetts, USA

3. Instituto de Investigaciones para la Industria Química, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Salta, Salta, Argentina

4. Centro de Biotecnología, Faculty of Sciences and Technology, Universidad Mayor de San Simón, Cochabamba, Bolivia

Abstract

Two extremely halophilic archaea, namely, Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, were isolated from a Bolivian salt mine and their genomes sequenced using single-molecule real-time sequencing. The GC-rich genomes of BOL5-4 and BOL6-1 were 4.6 and 3.8 Mbp, respectively, with large chromosomes and multiple megaplasmids. Genome annotation was incorporated into HaloWeb and methylation patterns incorporated into REBASE.

Funder

National Aeronautics and Space Administration

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00810-19

Reference16 articles.

1. Halophiles

2. Early evolution of purple retinal pigments on Earth and implications for exoplanet biosignatures

3. Genome Sequence and Methylation Patterns of Halorubrum sp. Strain BOL3-1, the First Haloarchaeon Isolated and Cultured from Salar de Uyuni, Bolivia

4. Berquist BR, Müller JA, DasSarma S. 2006. Chapter 27. Genetic systems for halophilic archaea, p 649–680. In Oren A, Rainey F (ed), Methods in microbiology, vol. 35. Elsevier Academic Press, San Diego, CA.

5. Ng WL, Yang CF, Halladay JT, Arora P, DasSarma S. 1995. Protocol 25. Isolation of genomic and plasmid DNAs from Halobacterium halobium, p 179–184. In DasSarma S, Fleischmann EM (ed), Archaea, a laboratory manual: halophiles. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

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